TY - JOUR
T1 - A simple method of dna extraction of mycobacterium tuberculosis from sputum cultures for sequencing analysis
AU - Koentjoro, Maharani Pertiwi
AU - Donastin, Adyan
AU - Prasetyo, Endry Nugroho
N1 - Publisher Copyright:
© 2021, African Traditional, Herbal Medicine Supporters Initiative. All rights reserved.
PY - 2021/9/1
Y1 - 2021/9/1
N2 - Background: Concern has been raised about DNA extraction from Mycobacterium tuberculosis due to its complex procedure. This study demonstrates a simple and fast DNA extraction method of mycobacterial genome to subsequent molecular investigation, such as Polymerization Chain Reaction (PCR) amplification, with species-specific primers and sequencing. Materials and Methods: Total DNA was isolated from M. tuberculosis cultured by using boil method. DNA was evaluated via measures of DNA quantity and quality (absorbance at 230, 260 and 280 nm), DNA integrity (electrophoresis). Molecular tests were tested namely PCR and sequencing. Conclusions: The quality of DNA obtained is acceptable for PCR and sequencing analysis. These findings demonstrate that the method used is inexpensive and suitable for minimum infrastructure facilities.
AB - Background: Concern has been raised about DNA extraction from Mycobacterium tuberculosis due to its complex procedure. This study demonstrates a simple and fast DNA extraction method of mycobacterial genome to subsequent molecular investigation, such as Polymerization Chain Reaction (PCR) amplification, with species-specific primers and sequencing. Materials and Methods: Total DNA was isolated from M. tuberculosis cultured by using boil method. DNA was evaluated via measures of DNA quantity and quality (absorbance at 230, 260 and 280 nm), DNA integrity (electrophoresis). Molecular tests were tested namely PCR and sequencing. Conclusions: The quality of DNA obtained is acceptable for PCR and sequencing analysis. These findings demonstrate that the method used is inexpensive and suitable for minimum infrastructure facilities.
KW - DNA extraction
KW - Mycobacterium tuberculosis
KW - Sequencing
KW - Sputum
UR - http://www.scopus.com/inward/record.url?scp=85114469913&partnerID=8YFLogxK
U2 - 10.21010/ajid.v15i2s.2
DO - 10.21010/ajid.v15i2s.2
M3 - Article
AN - SCOPUS:85114469913
SN - 2006-0165
VL - 15
SP - 19
EP - 22
JO - African Journal of Infectious Diseases
JF - African Journal of Infectious Diseases
IS - 2
ER -