High-dimensional quantitative structure-activity relationship modeling of influenza neuraminidase a/PR/8/34 (H1N1) inhibitors based on a two-stage adaptive penalized rank regression

Zakariya Yahya Algamal, Muhammad Hisyam Lee*, Abdo Mohammed Al-Fakih

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

31 Citations (Scopus)

Abstract

Outliers in the biological activity variable or the heavy tailed distribution of the error are often encountered in practice. Under these circumstances, the quantittative structure-activity relationship (QSAR) model using multiple linear regression is not efficient. In this paper, a two-stage adaptive penalized rank regression is proposed for constructing a robust and efficient high-dimensional QSAR model of influenza virus neuraminidase A/PR/8/34 (H1N1) inhibitors. The results demonstrate the effectiveness of our proposed method in simultaneously estimating a robust QSAR model and selecting informative molecular descriptors. Furthermore, the results prove that the proposed method can significantly encourage the grouping effect. The proposed method, because of the high predictive ability and robustness, could be a useful method in high-dimensional QSAR modeling.

Original languageEnglish
Pages (from-to)50-57
Number of pages8
JournalJournal of Chemometrics
Volume30
Issue number2
DOIs
Publication statusPublished - 1 Feb 2016
Externally publishedYes

Keywords

  • Adaptive elastic net
  • Influenza virus inhibitors
  • Penalized method
  • QSAR
  • Rank regression

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