TY - GEN
T1 - Indonesian Sorghum Genetic Diversities Based on Simple Sequence Repeat Markers
AU - Cahyono, Yuni Fitri Cahyaningsih
AU - Sarno, Riyanarto
AU - Taufany, Fadlilatul
AU - Larekeng, Siti Halimah
AU - Septiyanto, Abdullah Faqih
AU - Sungkono, Kelly Rossa
AU - Syahruddin, Karlina
AU - Lestari, Endang Gati
AU - Sholiq,
N1 - Publisher Copyright:
© 2023 IEEE.
PY - 2023
Y1 - 2023
N2 - Information on genetic diversity can be obtained by analyzing molecular data using bioinformatics. Molecular data of 15 sorghum varieties based on 38 SSR (Simple Sequence Repeat) markers were analyzed to obtain PIC (Polymorphic Information Content), genetic diversity, and phylogenetic tree. Genetic information in the form of the number of alleles (Na), heterozygosity value observed (Ho), and gene diversity or heterozygosity expected (He). Phylogenetic tree analysis was conducted using the Neighbor-Joining (NJ) method. The analysis showed that the primers used were very informative for detecting sorghum genetic diversity with an average PIC value of 0.54. The number of alleles obtained was 142 from 38 primers and the average number of alleles per primer was 3.82. The phylogenetic tree obtained showed that fifteen sorghum were divided into three clusters, and only the Samurai 2 variety was included in the third cluster. Genetic diversity brought was in the high category with a He value of 0.57. This genetic diversity information can be used to develop breeding strategies and conservation programs of sorghum.
AB - Information on genetic diversity can be obtained by analyzing molecular data using bioinformatics. Molecular data of 15 sorghum varieties based on 38 SSR (Simple Sequence Repeat) markers were analyzed to obtain PIC (Polymorphic Information Content), genetic diversity, and phylogenetic tree. Genetic information in the form of the number of alleles (Na), heterozygosity value observed (Ho), and gene diversity or heterozygosity expected (He). Phylogenetic tree analysis was conducted using the Neighbor-Joining (NJ) method. The analysis showed that the primers used were very informative for detecting sorghum genetic diversity with an average PIC value of 0.54. The number of alleles obtained was 142 from 38 primers and the average number of alleles per primer was 3.82. The phylogenetic tree obtained showed that fifteen sorghum were divided into three clusters, and only the Samurai 2 variety was included in the third cluster. Genetic diversity brought was in the high category with a He value of 0.57. This genetic diversity information can be used to develop breeding strategies and conservation programs of sorghum.
KW - Neighbor-joining
KW - Sorghum
KW - genetic variation
KW - microsatellite
KW - molecular markers
UR - http://www.scopus.com/inward/record.url?scp=85185564955&partnerID=8YFLogxK
U2 - 10.1109/ICITISEE58992.2023.10404899
DO - 10.1109/ICITISEE58992.2023.10404899
M3 - Conference contribution
AN - SCOPUS:85185564955
T3 - Proceedings - 2023 IEEE 7th International Conference on Information Technology, Information Systems and Electrical Engineering, ICITISEE 2023
SP - 53
EP - 58
BT - Proceedings - 2023 IEEE 7th International Conference on Information Technology, Information Systems and Electrical Engineering, ICITISEE 2023
PB - Institute of Electrical and Electronics Engineers Inc.
T2 - 7th International Conference on Information Technology, Information Systems and Electrical Engineering, ICITISEE 2023
Y2 - 29 November 2023 through 30 November 2023
ER -